Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015904053.1_cds_XP_016454196.1_48246
CDS Infomation

[gene=LOC107778454] [db_xref=GeneID:107778454] [protein=TBC1 domain family member 8B-like isoform X2] [protein_id=XP_016454196.1] [location=join(14748..14794,15786..15855,15967..16542,16631..16816,17270..17383,18581..18639,21014..21080,21158..21209,21308..21400,21520..21603,21710..22134,22962..23023,23209..23278,23499..23579,23652..23753,23841..23864)] [gbkey=CDS]
Sequence

ATGACGGTTAAAAGTTCTCCTTTTTTCCCCATTTTTGAACCCAAAAGGGATGCGTATGGA
TTTACTGTGAGACCACAACATCTTCAAAGATACAGAGAGTACGCTACTATATATAGGGAA
GAAGAAGAAGAAAGATCAGAGAAGTGGAAGAGCTTTCTTGATAACCAAGAAGAATCAAAT
CAGCCACATGCTTCAGAGAAGTTGGACGTCCAGACTGTGGATTTTGAAGTTAGGAACGAG
CAGCAAACGGTTCCTGCGCACGTGTCTCAAGAAGAAGGTGATGGTTCAGCAGGAGAGAAG
CCAGTCTCAGACATTAAAACGGAAAGTGATCTTAAAGGGGAGTTGTCAGCTTATCTACCA
GCAAAATCCTGTCAGGCTTATACGTGGGCCGAAATCAGAGCATCCTTGAGTCGCATTGAT
CATCTGATGAGCTTTCGTGTGAAGAAGACACCAAATGTGAAAGCTGAAGTGTCAACTGGT
ATTCACAATCATCTTGCAACTATTAAAGAGCCAGAGGAGTCAGAAGAAGAAAATGGGGAA
GAATGTTCTGTCAATGAAGAATTGGGTGATGCTACCAATACCTCTGCAGAAGTAGGTACT
GCCAGCAGTGTAGTTTCTCCTGATCTTTCCTTTCCTTGGAAAGAGCTCGAGTTCCTTGTT
CGTGGAGGAGTTCCAAGGGATCTTAGGGGAGAGGTATGGCAAGCTTTTGTTGGAGTTAAA
GCACGTCGGCTGGAGAGATATTACGTGGATTTGCTTGATCCAGAAAGTGAGACTGGTGAT
GGTCAGGAGCATGATGAATCGTCATTGGCTGAAGAGAATAAGCAACAGAGTAAAGAAAGC
GCTCACGTGCCAGAGAAATTGAGAAAGCAGATTGAGAAGGATCTTCCTAGAACCTTTCCT
GGGCATCCTGCACTAGATGAGAATGGTCGAAATTCCTTAAGGCGTGTACTTATAGCATAT
GCTCGACACAATCCAGATGTAGGGTATTGCCAGGCAATGAATTTTTTTGCTGGTATCTTA
CTTCTAATGATGCCAGAAGAAAATGCATTTTGGGCATTGGTGGGTATTATCGATGAATAC
TTTGACGGCTGTTACTCGCAAGAAATGATAGAATCCCAGGTGGATCAACTGGTGTTTGAG
GAGTTAGTGCGTGAAAGGTTTCCGAAACTTGTCAATCATCTGGATTACTTGGGAATGCAA
GTGGCATGGATTTCTGGACCTTGGTTTCTTTCAATTTTCGTAAATGTGCTTCCCTGGGAA
AGTGTTCTTCGAGTTTGGGATGTGCTTCTCTTTGAGGGAAATCGTGTCATGCTCTTTCGA
ACAGCACTTGCTTTGATGGAGTTGTATGGTCCTGCTGTAGTTACAACTAAGGACGCTGGG
GATGCAATCACTTTATTTCAATCCCTTACTGGCTCAACTTTTGATAGTAGCCAACTTGTG
TTGACAGCTTGTATGGGTTTCTTAAATGTCACTGAAGATAGATTGCTAGCACTGAGAGAA
AAACATCGGCCAGCTGTTCTTGCAGTTACTGAGGAGAGATCACAAGGAGGGCCTGTTAGG
AAAGACCCAAAAGGTCTTGCCTCCAAGCTGTATAGTTTTAAGCATGATCCTGAATCATTT
ATAAAAGAAACAAAGCCGGAGGAACGGCCAGGTGATAAGAAAATAGGCAATAAAACATCA
GACTCAAATTCCAACTCCGCAAGTCTGGATGAATATCTCAACAACCTGAATATAGATTCA
CATGTGGATTCCCTTCCAGATGTTCAAGAACAGGTTGTTTGGTTGAAGGTTGAGCTCTGT
AGGATGCTGGAAGAGAAGAGAGCAGCTACCCTGAGAGCTGAAGAGTTGGAGACGGCGCTT
GTGGAGATGGTCAAAGAAGATAACCGACGACAATTAAGTGCAAGAGTTGAGCAATTGGAG
CAGGAAGTGGCTGAACTGCGACAAGCCCTTGATGATAAGAAAGAGCAAGAGCAAGCAATG
CTTCAGGTTTTGATGCGGGTTGAGCAAGAACAGAAGGTCACGGAAGACGCTAGGATTGCT
GCCGAGCAGGATGTGGCTGCTCAAAAGTATGCAGTACATGTTCTTCAGGTGATTGCTCAA
AACTCCAACTAG

Peptide Sequence

PEP ID

XP_016454196.1
PEP Infomation

PREDICTED: TBC1 domain family member 8B-like isoform X2 [Nicotiana tabacum]
Sequence

MTVKSSPFFPIFEPKRDAYGFTVRPQHLQRYREYATIYREEEEERSEKWKSFLDNQEESN
QPHASEKLDVQTVDFEVRNEQQTVPAHVSQEEGDGSAGEKPVSDIKTESDLKGELSAYLP
AKSCQAYTWAEIRASLSRIDHLMSFRVKKTPNVKAEVSTGIHNHLATIKEPEESEEENGE
ECSVNEELGDATNTSAEVGTASSVVSPDLSFPWKELEFLVRGGVPRDLRGEVWQAFVGVK
ARRLERYYVDLLDPESETGDGQEHDESSLAEENKQQSKESAHVPEKLRKQIEKDLPRTFP
GHPALDENGRNSLRRVLIAYARHNPDVGYCQAMNFFAGILLLMMPEENAFWALVGIIDEY
FDGCYSQEMIESQVDQLVFEELVRERFPKLVNHLDYLGMQVAWISGPWFLSIFVNVLPWE
SVLRVWDVLLFEGNRVMLFRTALALMELYGPAVVTTKDAGDAITLFQSLTGSTFDSSQLV
LTACMGFLNVTEDRLLALREKHRPAVLAVTEERSQGGPVRKDPKGLASKLYSFKHDPESF
IKETKPEERPGDKKIGNKTSDSNSNSASLDEYLNNLNIDSHVDSLPDVQEQVVWLKVELC
RMLEEKRAATLRAEELETALVEMVKEDNRRQLSARVEQLEQEVAELRQALDDKKEQEQAM
LQVLMRVEQEQKVTEDARIAAEQDVAAQKYAVHVLQVIAQNSN

Transcript Sequence

Gene sequence data has not been registered.